Collection Citation
| Collection Title | Phytozome: a Tool for Green Plant Comparative Genomics | ||
| Collection Sponsor | USDOE - Office of Science (SC) | ||
| Other Sponsors | National Science Foundation (NSF); University of California, Berkeley; National Institutes of Health (NIH); Gordon and Betty Moore Foundation | ||
| Host Website | www.phytozome.net | ||
| Other Related Organizations | DOE Joint Genome Institite (JGI); Center for Integrative Genomics (CIG) | ||
| Main Content Type | Specialized Mix | ||
| Subject Categories | 59 - BASIC BIOLOGICAL SCIENCES | ||
| Keywords | Speciation events; Genomics; Nodes; Clustering; BLAST; Plant genomics; Biofuel research | ||
| Description | Phytozome is a joint project of the Department of Energy's Joint Genome Institute and the Center for Integrative Genomics to facilitate comparative genomic studies amongst green plants. Clusters of orthologous and paralogous genes that represent the modern descendents of ancestral gene sets are constructed at key phylogenetic nodes. These clusters allow easy access to clade specific orthology/paralogy relationships as well as clade specific genes and gene expansions. As of release v4.0, Phytozome provides access to nine sequenced and annotated green plant genomes, eight of which have been clustered into gene families at six evolutionarily significant nodes. Where possible, each gene has been annotated with PFAM, KOG, KEGG, and PANTHER assignments, and publicly available annotations from RefSeq, UniProt, TAIR, JGI are hyper-linked and searchable. [Copied from the Overview at http://www.phytozome.net/Phytozome_info.php] The proteomes of the following organisms are clustered in v4.0 of Phytozome:
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| DDE Number | DDE00318 | ||
| Special Interface | Yes | ||
| Registration_Required | No |
