Collection Citation

 Collection TitleGenome Bioinformatics Data from the University of California at Santa Cruz 
 Collection Creator/PIENCODE (Encyclopedia of DNA Elements) Consortium 
 Collection SponsorUSDOE 
 Other SponsorsNational Science Foundation (NSF); University of California BIOTECH; the Sloan Foundation; David and Lucille Packard Foundation; National Institutes of Health (NIH); Zahler; Howard Hughes Medical Institute (HHMI) 
 Host WebsiteUniversity of California, Santa Cruz 
 Other Related OrganizationsUniversity of California Santa Cruz 
 Main Content TypeSpecialized Mix 
 Subject Categories59 - BASIC BIOLOGICAL SCIENCES 
 KeywordsHuman Genome; ENCODE; Proteomes; Gene sequencing; Bioinformatics; Vertebrates; Deuterostomes; Insects; Nematodes; Yeast 
 DescriptionThe UCSC Genome Bioinformatics website provides the reference sequence and working draft assemblies for a large collection of genomes, including the human genome and genomes for various vertebrates, deuterostomes, insects, nematodes, and yeast. The collection is enhanced with an amazing array of specialized tools and browsers, most of them developed by the staff of the UCSC Genome Bioinformatics Group. Tools include:
  • UCSC Genome Browser
  • DNA BLAT search
  • Specialized interface for table browsing
  • UCSC Human Gene Sorter
  • UCSC In-Silico PCR
  • Genome graphs
  • Galaxy analysis tool
  • VisiGene “virtual microscope” image browser
  • Proteome browser
  • UCSC Archaeal Genome Browser
  • Various utilities such as a Phylogenetic Tree GifMaker

In addition to the sponsors listed in this citation, many additional institutions and individuals provided support and contributed data to this collection. A full listing is available on the website at http://genome.ucsc.edu/goldenPath/credits.html.

 
 DDE NumberDDE00309 
 Special InterfaceYes 
 Registration_RequiredNo