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Title: Coral acid rich protein selects vaterite polymorph in vitro

Journal Article · · Journal of Structural Biology

Corals and other biomineralizing organisms use proteins and other molecules to form different crystalline polymorphs and biomineral structures. In corals, it’s been suggested that proteins such as Coral Acid Rich Proteins (CARPs) play a major role in the polymorph selection of their calcium carbonate (CaCO3) aragonite exoskeleton. To date, four CARPs (1–4) have been characterized: each with a different amino acid composition and different temporal and spatial expression patterns during coral developmental stages. Interestingly, CARP3 is able to alter crystallization pathways in vitro, yet its function in this process remains enigmatic. To better understand the CARP3 function, we performed two independent in vitro CaCO3 polymorph selection experiments using purified recombinant CARP3 at different concentrations and at low or zero Mg2+ concentration. Our results show that, in the absence of Mg2+, CARP3 selects for the vaterite polymorph and inhibits calcite. However, in the presence of a low concentration of Mg2+ and CARP3 both Mg-calcite and vaterite are formed, with the relative amount of Mg-calcite increasing with CARP3 concentration. In all conditions, CARP3 did not select for the aragonite polymorph, which is the polymorph associated to CARP3 in vivo, even in the presence of Mg2+ (Mg:Ca molar ratio equal to 1). Our results further emphasize the importance of Mg:Ca molar ratios similar to that in seawater (Mg:Ca equal to 5) and the activity of the biological system in a aragonite polymorph selection in coral skeleton formation.

Research Organization:
Univ. of Wisconsin, Madison, WI (United States); Univ. of California, Oakland, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC)
Grant/Contract Number:
FG02-07ER15899; AC02-05CH11231
OSTI ID:
2325189
Alternate ID(s):
OSTI ID: 1800427
Journal Information:
Journal of Structural Biology, Journal Name: Journal of Structural Biology Vol. 209 Journal Issue: 2; ISSN 1047-8477
Publisher:
ElsevierCopyright Statement
Country of Publication:
United States
Language:
English

References (74)

Control of Aragonite or Calcite Polymorphism by Mollusk Shell Macromolecules journal January 1996
A novel basic matrix protein of Pinctada fucata , PNU9, functions as inhibitor during crystallization of aragonite journal January 2019
A crustacean Ca2+-binding protein with a glutamate-rich sequence promotes CaCO3 crystallization journal November 2004
Control of Polymorph Selection in Amorphous Calcium Carbonate Crystallization by Poly(Aspartic Acid): Two Different Mechanisms journal April 2017
Stabilization of amorphous calcium carbonate by specialized macromolecules in biological and synthetic precipitates journal March 1996
Taking Advantage of Disorder: Amorphous Calcium Carbonate and Its Roles in Biomineralization journal June 2003
Inner-Shell Excitation Spectroscopy of the Peptide Bond:  Comparison of the C 1s, N 1s, and O 1s Spectra of Glycine, Glycyl-Glycine, and Glycyl-Glycyl-Glycine journal August 2003
Energetic and structural studies of amorphous Ca1−xMgxCO3·nH2O (0⩽x⩽1) journal August 2012
An Acidic Matrix Protein, Pif, Is a Key Macromolecule for Nacre Formation journal August 2009
The Skeletal Organic Matrix from Mediterranean Coral Balanophyllia europaea Influences Calcium Carbonate Precipitation journal July 2011
Exceptional preservation of organic matrix and shell microstructure in a Late Cretaceous Pinna fossil revealed by photoemission electron spectromicroscopy journal July 2018
The non-classical nucleation of crystals: microscopic mechanisms and applications to molecular crystals, ice and calcium carbonate journal November 2012
Biomineralization in Mediterranean Corals: The Role of the Intraskeletal Organic Matrix journal July 2014
Amorphous calcium carbonate transforms into calcite during sea urchin larval spicule growth journal March 1997
In Vitro Coral Biomineralization under Relevant Aragonite Supersaturation Conditions journal April 2019
An Overview of Biomineralization Processes and the Problem of the Vital Effect journal January 2003
Control of crystal phase switching and orientation by soluble mollusc-shell proteins journal May 1996
Influence of some polysaccharides on the production of calcium carbonate filler particles journal October 2008
Coral biomineralization: From the gene to the environment journal November 2011
Purification and Functional Analysis of a 40 kD Protein Extracted from the Strombus decorus persicus Mollusk Shells journal February 2006
Minerals in the pre-settled coral Stylophora pistillata crystallize via protein and ion changes journal May 2018
Onset of Amorphous Structure in CaCO3: Geometric and Electronic Structures of (CaCO3) n (n = 2–7) Clusters by Ab Initio Calculations journal November 2011
The Coral Protein CARP3 Acts from a Disordered Mineral Surface Film to Divert Aragonite Crystallization in Favor of Mg-Calcite journal April 2018
On Biomineralization book July 1989
Immunolocalization of skeletal matrix proteins in tissue and mineral of the coral Stylophora pistillata journal August 2014
The Effect of Aspartic Acid and Glycine on Amorphous Calcium Carbonate (ACC) Structure, Stability and Crystallization journal January 2014
A hydrated crystalline calcium carbonate phase: Calcium carbonate hemihydrate journal January 2019
Echinoderm Skeletal Preservation: Calcite-Aragonite Seas and the Mg/Ca Ratio of Phanerozoic Oceans journal May 2004
Transformation and crystallization energetics of synthetic and biogenic amorphous calcium carbonate journal September 2010
Carboxylated molecules regulate magnesium content of amorphous calcium carbonates during calcification journal December 2009
Coral calcification, mucus, and the origin of skeletal organic molecules journal June 2019
Skeletal matrices, muci, and the origin of invertebrate calcification. journal February 1996
Review: geological and experimental evidence for secular variation in seawater Mg/Ca (calcite-aragonite seas) and its effects on marine biological calcification journal January 2010
Seawater Chemistry and Early Carbonate Biomineralization journal June 2007
Secular oscillations in the carbonate mineralogy of reef-building and sediment-producing organisms driven by tectonically forced shifts in seawater chemistry journal November 1998
Nacre Protein Fragment Templates Lamellar Aragonite Growth journal May 2010
Cloning and sequence determination of rat dentin sialoprotein, a novel dentin protein. journal February 1994
Factors Involved in the Formation of Amorphous and Crystalline Calcium Carbonate:  A Study of an Ascidian Skeleton journal January 2002
The role of acidic phosphoproteins in biomineralization journal January 2014
Biomineralization by particle attachment in early animals journal August 2019
Distribution of magnesium in coral skeleton: MG MICRODISTRIBUTION IN CORAL journal December 2004
Calcite and aragonite seas and the de novo acquisition of carbonate skeletons: Calcite and aragonite seas and carbonate skeletons journal August 2010
INTRACELLULAR CRYSTAL-BEARING VESICLES IN THE EPIDERMIS OF SCLERACTINIAN CORALS, ASTRANGIA DANAE (AGASSIZ) AND PORITES PORITES (PALLAS) journal February 1977
Molecular recognition in biomineralization journal March 1988
Mineral formation in the primary polyps of pocilloporoid corals journal September 2019
Nucleation of metastable aragonite CaCO 3 in seawater journal March 2015
Human bone sialoprotein. Deduced protein sequence and chromosomal localization. journal February 1990
The multiple effects of amino acids on the early stages of calcium carbonate crystallization journal October 2012
Minerals formed by organisms journal March 1981
Vaterite: a mineralization product of the hard tissues of a marine organism (Ascidiacea) journal April 1975
The role of magnesium in the crystal growth of calcite and aragonite from sea water journal April 1975
Batch production of a silk-elastin-like protein in E. coli BL21(DE3): key parameters for optimisation journal January 2013
The Transient Phase of Amorphous Calcium Carbonate in Sea Urchin Larval Spicules: The Involvement of Proteins and Magnesium Ions in Its Formation and Stabilization journal June 2003
Carbon edge XANES spectroscopy of amino acids and peptides journal July 1997
Cloning and Characterization of Four Novel Coral Acid-Rich Proteins that Precipitate Carbonates In Vitro journal June 2013
Amorphous calcium carbonate particles form coral skeletons journal August 2017
Molecular cloning of a human dentin sialophosphoprotein gene: Human dentin sialophosphoprotein gene journal February 2000
Oxygen Spectroscopy and Polarization-Dependent Imaging Contrast (PIC)-Mapping of Calcium Carbonate Minerals and Biominerals journal May 2014
Organic Matrix-related mineralization of sea urchin spicules, spines, test and teeth journal January 2011
Biological control of aragonite formation in stony corals journal June 2017
Cellular Control Over Spicule Formation in Sea Urchin Embryos: A Structural Approach journal March 1999
The probing depth of total electron yield in the sub-keV range: TEY-XAS and X-PEEM journal July 2003
Mechanism of Calcite Co-Orientation in the Sea Urchin Tooth journal December 2009
Chemical and physical controls on the transformation of amorphous calcium carbonate into crystalline CaCO3 polymorphs journal January 2017
Phase transitions in biogenic amorphous calcium carbonate journal April 2012
Alterations in Erythrocyte Membrane Lipids Induced by Low Doses of Ionizing Radiation as Revealed by 1,6-diphenyl-1,3,5-hexatriene Fluorescence Lifetime journal January 1991
The role of magnesium in stabilising amorphous calcium carbonate and controlling calcite morphologies journal June 2003
Transformation mechanism of amorphous calcium carbonate into calcite in the sea urchin larval spicule journal November 2008
Mollusk Shell Formation: A Source of New Concepts for Understanding Biomineralization Processes journal January 2006
(V. C.) Farmer, editor. The Infrared Spectra of Minerals. London (Mineralogical Society), 1974. x + 539 pp., 219 figs. Price £16. journal March 1975
Secular variations in Precambrian seawater chemistry and the timing of Precambrian aragonite seas and calcite seas journal January 2003
Design strategies in mineralized biological materials journal January 1997
Examining marine particulate organic matter at sub-micron scales using scanning transmission X-ray microscopy and carbon X-ray absorption near edge structure spectroscopy journal December 2004
Nanoscale Transforming Mineral Phases in Fresh Nacre journal October 2015