skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Functional analysis of Salix purpurea genes support roles for ARR17 and GATA15 as master regulators of sex determination

Journal Article · · Plant Direct
DOI:https://doi.org/10.1002/pld3.546· OSTI ID:2212828
ORCiD logo [1]; ORCiD logo [2]; ORCiD logo [2]; ORCiD logo [2]; ORCiD logo [2];  [3]; ORCiD logo [3]; ORCiD logo [3]; ORCiD logo [3]; ORCiD logo [2]; ORCiD logo [2]; ORCiD logo [2]; ORCiD logo [2]; ORCiD logo [4]
  1. Horticulture Section, School of Integrative Plant Science Cornell University, Cornell AgriTech Geneva New York USA, Biosciences Division Oak Ridge National Laboratory Oak Ridge Tennessee USA
  2. Biosciences Division Oak Ridge National Laboratory Oak Ridge Tennessee USA
  3. Lawrence Berkeley National Laboratory US Department of Energy Joint Genome Institute Berkeley California USA
  4. Horticulture Section, School of Integrative Plant Science Cornell University, Cornell AgriTech Geneva New York USA

Abstract The Salicaceae family is of growing interest in the study of dioecy in plants because the sex determination region (SDR) has been shown to be highly dynamic, with differing locations and heterogametic systems between species. Without the ability to transform and regenerate Salix in tissue culture, previous studies investigating the mechanisms regulating sex in the genus Salix have been limited to genome resequencing and differential gene expression, which are mostly descriptive in nature, and functional validation of candidate sex determination genes has not yet been conducted. Here, we used Arabidopsis to functionally characterize a suite of previously identified candidate genes involved in sex determination and sex dimorphism in the bioenergy shrub willow Salix purpurea . Six candidate master regulator genes for sex determination were heterologously expressed in Arabidopsis, followed by floral proteome analysis. In addition, 11 transcription factors with predicted roles in mediating sex dimorphism downstream of the SDR were tested using DAP‐Seq in both male and female S. purpurea DNA. The results of this study provide further evidence to support models for the roles of ARR17 and GATA15 as master regulator genes of sex determination in S. purpurea , contributing to a regulatory system that is notably different from that of its sister genus Populus . Evidence was also obtained for the roles of two transcription factors, an AP2 / ERF family gene and a homeodomain‐like transcription factor, in downstream regulation of sex dimorphism.

Research Organization:
Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER); USDOE Office of Science (SC), Basic Energy Sciences (BES). Scientific User Facilities (SUF); USDOE Office of Science (SC), Office of Workforce Development for Teachers & Scientists (WDTS)
Grant/Contract Number:
DE‐SC0014664; DE‐AC02‐05CH11231; DE‐AC05‐00OR22725; AC05-00OR22725; SC0014664; AC02-05CH11231
OSTI ID:
2212828
Alternate ID(s):
OSTI ID: 2217716; OSTI ID: 2228391
Journal Information:
Plant Direct, Journal Name: Plant Direct Vol. 7 Journal Issue: 11; ISSN 2475-4455
Publisher:
Wiley Blackwell (John Wiley & Sons)Copyright Statement
Country of Publication:
United Kingdom
Language:
English

References (51)

Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape journal May 2016
Protein Aggregation Capture on Microparticles Enables Multipurpose Proteomics Sample Preparation* journal May 2019
SHATTERPROOF MADS-box genes control seed dispersal in Arabidopsis journal April 2000
AliView: a fast and lightweight alignment viewer and editor for large datasets journal August 2014
Persistence and plasticity in bacterial gene regulation journal November 2021
Structural variation of a sex‐linked region confers monoecy and implicates GATA15 as a master regulator of sex in Salix purpurea journal March 2023
Proteome Discoverer—A Community Enhanced Data Processing Suite for Protein Informatics journal March 2021
A willow sex chromosome reveals convergent evolution of complex palindromic repeats journal February 2020
Exploiting the Dynamic Relationship between Peptide Separation Quality and Peptide Coisolation in a Multiple-Peptide Matches-per-Spectrum Approach Offers a Strategy To Optimize Bottom-Up Proteomics Throughput and Depth journal May 2019
Transcriptome analysis during floral organ development provides insights into stamen petaloidy in Lagerstroemia speciosa journal September 2019
Ectopic expression of the floral homeotic gene AGAMOUS in transgenic Arabidopsis plants alters floral organ identity journal October 1992
Transcriptional program controlled by the floral homeotic gene AGAMOUS during early organogenesis journal February 2005
pGFPGUSPlus, a new binary vector for gene expression studies and optimising transformation systems in plants journal August 2007
Agrobacterium-mediated transformation of Arabidopsis thaliana using the floral dip method journal June 2006
Diverse roles for MADS box genes in Arabidopsis development. journal August 1995
Default Sex and Single Gene Sex Determination in Dioecious Plants journal July 2020
Two Expansin Genes, AtEXPA4 and AtEXPB5, Are Redundantly Required for Pollen Tube Growth and AtEXPA4 Is Involved in Primary Root Elongation in Arabidopsis thaliana journal February 2021
A Bsister MADS‐box gene involved in ovule and seed development in petunia and Arabidopsis journal August 2006
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database journal November 1994
Phytozome: a comparative platform for green plant genomics journal November 2011
Plant sex determination and sex chromosomes journal February 2002
Repeated turnovers keep sex chromosomes young in willows journal September 2022
FLOR1, a putative interaction partner of the floral homeotic protein AGAMOUS, is a plant-specific intracellular LRR journal August 2004
Two Y-chromosome-encoded genes determine sex in kiwifruit journal August 2019
An Integrative Analysis of Transcriptome, Proteome and Hormones Reveals Key Differentially Expressed Genes and Metabolic Pathways Involved in Flower Development in Loquat journal July 2020
A single gene underlies the dynamic evolution of poplar sex determination journal June 2020
MapMan4: A Refined Protein Classification and Annotation Framework Applicable to Multi-Omics Data Analysis journal June 2019
Integrative genomics reveals paths to sex dimorphism in Salix purpurea L journal August 2021
LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana journal February 2016
Dominance and Sexual Dimorphism Pervade the Salix purpurea L. Transcriptome journal September 2017
Semi-supervised learning for peptide identification from shotgun proteomics datasets journal October 2007
The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools journal December 2011
On the rarity of dioecy in flowering plants journal February 2017
The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray) journal September 2006
Studying the role of FASCIATA5 gene in the regulation of flower development in Arabidopsis thaliana journal January 2015
Sex Determination by Two Y-Linked Genes in Garden Asparagus journal March 2020
limma powers differential expression analyses for RNA-sequencing and microarray studies journal January 2015
Pollen-specific gene SKU5-SIMILAR 13 enhances growth of pollen tubes in the transmitting tract in Arabidopsis journal October 2021
Activation Tagging of the Floral Inducer FT journal December 1999
Infrageneric Classification of Salix (Salicaceae) in the New World journal January 1997
Structural, histochemical, and protein analysis of male reproductive development in willow journal May 2005
Sex determination through X–Y heterogamety in Salix nigra journal January 2021
Genetic mapping of sexually dimorphic volatile and non-volatile floral secondary chemistry of a dioecious willow journal June 2022
Characterization of a large sex determination region in Salix purpurea L. (Salicaceae) journal July 2018
The Arabidopsis SOC1‐like genes AGL42, AGL71 and AGL72 promote flowering in the shoot apical and axillary meristems journal July 2011
Global Quantitative Proteomics Studies Revealed Tissue-Preferential Expression and Phosphorylation of Regulatory Proteins in Arabidopsis journal August 2020
Mapping the sex determination region in the Salix F1 hybrid common parent population confirms a ZW system in six diverse species journal March 2022
LEUNIG regulates AGAMOUS expression in Arabidopsis flowers journal April 1995
Single locus sex determination and female heterogamety in the basket willow (Salix viminalis L.) journal February 2015
The Arabidopsis homeotic genes APETALA3 and PISTILLATA are sufficient to provide the B class organ identity function journal January 1996
TAPETUM DETERMINANT1 Is Required for Cell Specialization in the Arabidopsis Anther journal November 2003

Similar Records

Integrative genomics reveals paths to sex dimorphism in Salix purpurea L
Journal Article · Sun Aug 01 00:00:00 EDT 2021 · Horticulture Research · OSTI ID:2212828

Dominance and Sexual Dimorphism Pervade the Salix purpurea L. Transcriptome
Journal Article · Fri Sep 01 00:00:00 EDT 2017 · Genome Biology and Evolution · OSTI ID:2212828

Characterization of a large sex determination region in Salix purpurea L. (Salicaceae)
Journal Article · Wed Jul 18 00:00:00 EDT 2018 · Molecular Genetics and Genomics · OSTI ID:2212828