Independently Evolved Virulence Effectors Converge onto Hubs in a Plant Immune System Network
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journal
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July 2011 |
Three Acyltransferases and Nitrogen-responsive Regulator Are Implicated in Nitrogen Starvation-induced Triacylglycerol Accumulation in Chlamydomonas
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March 2012 |
A Galacturonic Acid–Containing Xyloglucan Is Involved in Arabidopsis Root Hair Tip Growth
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November 2012 |
The Physcomitrella patens gene atlas project: large-scale RNA-seq based expression data
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June 2018 |
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
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May 2010 |
KEGG: Kyoto Encyclopedia of Genes and Genomes
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January 2000 |
Fast and SNP-tolerant detection of complex variants and splicing in short reads
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February 2010 |
The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization
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December 2017 |
WGCNA: an R package for weighted correlation network analysis
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December 2008 |
A Gene Regulatory Network for Root Epidermis Cell Differentiation in Arabidopsis
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January 2012 |
Characterizing and measuring bias in sequence data
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January 2013 |
Meta-analysis of RNA-seq expression data across species, tissues and studies
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December 2015 |
Mobile MUTE specifies subsidiary cells to build physiologically improved grass stomata
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March 2017 |
The effects of redox controls mediated by glutathione peroxidases on root architecture in Arabidopsis thaliana
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January 2014 |
Genomic basis underlying the metabolome-mediated drought adaptation of maize
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September 2021 |
Phytozome: a comparative platform for green plant genomics
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November 2011 |
PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants
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October 2016 |
Nutrient dose-responsive transcriptome changes driven by Michaelis–Menten kinetics underlie plant growth rates
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May 2020 |
Coexpression network analysis of neural tissue reveals perturbations in developmental processes in schizophrenia
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March 2010 |
The arabidopsis information resource: Making and mining the “gold standard” annotated reference plant genome: Tair: Making and Mining the “Gold Standard” Plant Genome
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August 2015 |
The development of Arabidopsis as a model plant
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March 2010 |
POFs: what we don’t know can hurt us
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November 2007 |
Integrating Genetic and Network Analysis to Characterize Genes Related to Mouse Weight
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journal
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January 2006 |
Plant phenotypic plasticity in a changing climate
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journal
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December 2010 |
Towards revealing the functions of all genes in plants
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April 2014 |
OrthoFinder: phylogenetic orthology inference for comparative genomics
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November 2019 |
PEATmoss ( Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens
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journal
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January 2020 |
A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
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journal
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February 2014 |
Fast and inexpensive protocols for consistent extraction of high quality DNA and RNA from challenging plant and fungal samples for high-throughput SNP genotyping and sequencing applications
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journal
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October 2018 |
Growth Stages of Sorghum [Sorghum bicolor, (L.) Moench.]1
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January 1972 |
A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism
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May 2019 |
Steady sucrose degradation is a prerequisite for tolerance to root hypoxia
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March 2014 |
Rapid method for high-quality RNA isolation from seed endosperm containing high levels of starch
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journal
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June 2005 |
Cell Wall Heterogeneity in Root Development of Arabidopsis
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journal
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August 2016 |
Expression Atlas update: gene and protein expression in multiple species
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journal
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November 2021 |
Comprehensive comparative analysis of strand-specific RNA sequencing methods
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journal
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August 2010 |
Transcriptomic analysis of autistic brain reveals convergent molecular pathology
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May 2011 |
Biological pathway expression complementation contributes to biomass heterosis in
Arabidopsis
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April 2021 |
HTSeq--a Python framework to work with high-throughput sequencing data
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journal
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September 2014 |
Describing and Quantifying Growth Stages of Perennial Forage Grasses
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journal
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January 1991 |
Normalization of RNA-seq data using factor analysis of control genes or samples
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journal
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August 2014 |
Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times
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September 2014 |
Identification of differentially expressed genes between sorghum genotypes with contrasting nitrogen stress tolerance by genome-wide transcriptional profiling
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January 2014 |
Divergent Evolutionary Pattern of Starch Biosynthetic Pathway Genes in Grasses and Dicots
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journal
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July 2012 |
The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals
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journal
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October 2020 |
A Systems Level Analysis of Transcriptional Changes in Alzheimer's Disease and Normal Aging
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journal
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February 2008 |
A Genome-Wide Analysis of the Effects of Sucrose on Gene Expression in Arabidopsis Seedlings under Anoxia
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journal
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March 2005 |
Transcriptome profiling revealed candidate genes, pathways and transcription factors related to nitrogen utilization and excessive nitrogen stress in perennial ryegrass
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journal
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March 2022 |
Induction of budding on chloronemata and caulonemata of the moss, Physcomitrella patens, using isopentenyladenine
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journal
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January 1985 |
The Arabidopsis Transcriptome Responds Specifically and Dynamically to High Light Stress
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journal
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December 2019 |
Analysis of oncogenic signaling networks in glioblastoma identifies ASPM as a molecular target
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November 2006 |
Quantitative and population genomics suggest a broad role of stay‐green loci in the drought adaptation of sorghum
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November 2021 |
Transcriptome and DNA methylome divergence of inflorescence development between 2 ecotypes in Panicum hallii
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journal
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April 2023 |
Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification
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journal
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September 2004 |
Overall Alteration of Circadian Clock Gene Expression in the Chestnut Cold Response
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journal
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October 2008 |
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
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journal
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August 2011 |
The Emerging Role of Reactive Oxygen Species Signaling during Lateral Root Development
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journal
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May 2014 |
The Moss Physcomitrella patens: A Novel Model System for Plant Development and Genomic Studies
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journal
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February 2009 |
Systems analysis of transcriptome data provides new hypotheses about Arabidopsis root response to nitrate treatments
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journal
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January 2014 |
Interaction between HY1 and H2O2 in auxin-induced lateral root formation in Arabidopsis
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journal
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December 2013 |
High-quality genome sequence of white lupin provides insight into soil exploration and seed quality
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journal
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January 2020 |
TimeTree: A Resource for Timelines, Timetrees, and Divergence Times
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journal
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April 2017 |
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
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journal
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December 2014 |
Plant Public RNA‐seq Database: a comprehensive online database for expression analysis of ~45 000 plant public RNA‐Seq libraries
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journal
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March 2022 |