Generating Efficient Quantum Chemistry Codes for Novel Architectures
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November 2012 |
Graphical Processing Units for Quantum Chemistry
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November 2008 |
Analytic first derivatives of floating occupation molecular orbital-complete active space configuration interaction on graphical processing units
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July 2015 |
Relationship between Hydrogen-Bonding Motifs and the 1b 1 Splitting in the X-ray Emission Spectrum of Liquid Water
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April 2021 |
On the Hamiltonian replica exchange method for efficient sampling of biomolecular systems: Application to protein structure prediction
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May 2002 |
A partial nudged elastic band implementation for use with large or explicitly solvated systems
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December 2009 |
ortho and para chromophores of green fluorescent protein: controlling electron emission and internal conversion
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January 2017 |
Quantum Mechanics/Molecular Mechanics Modeling of Enzymatic Processes: Caveats and Breakthroughs
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December 2015 |
Ab Initio Nonadiabatic Quantum Molecular Dynamics
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February 2018 |
Multiscale modeling of enzymes: QM-cluster, QM/MM, and QM/MM/MD: A tutorial review
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January 2018 |
The Green Fluorescent Protein
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June 1998 |
Quantum Chemistry on Graphical Processing Units. 1. Strategies for Two-Electron Integral Evaluation
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January 2008 |
Origin, Nature, and Fate of the Fluorescent State of the Green Fluorescent Protein Chromophore at the CASPT2//CASSCF Resolution
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May 2004 |
i-PI 2.0: A universal force engine for advanced molecular simulations
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March 2019 |
Nanoscale Multireference Quantum Chemistry: Full Configuration Interaction on Graphical Processing Units
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September 2015 |
Conical intersection dynamics in solution: The chromophore of Green Fluorescent Protein
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January 2004 |
Editorial: Quantum Mechanical/Molecular Mechanical Approaches for the Investigation of Chemical Systems – Recent Developments and Advanced Applications
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September 2018 |
Electronic Absorption Spectra from MM and ab Initio QM/MM Molecular Dynamics: Environmental Effects on the Absorption Spectrum of Photoactive Yellow Protein
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September 2012 |
Studying protein dynamics in living cells
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June 2001 |
Exploiting graphical processing units to enable quantum chemistry calculation of large solvated molecules with conductor-like polarizable continuum models
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October 2018 |
QM/MM Methods for Biomolecular Systems
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January 2009 |
TeraChem: Accelerating electronic structure and ab initio molecular dynamics with graphical processing units
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June 2020 |
The Quality of the Embedding Potential Is Decisive for Minimal Quantum Region Size in Embedding Calculations: The Case of the Green Fluorescent Protein
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November 2017 |
Flexible simple point-charge water model with improved liquid-state properties
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January 2006 |
Discovering chemistry with an ab initio nanoreactor
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November 2014 |
Spectroscopy in Complex Environments from QM–MM Simulations
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February 2018 |
Extraction, Purification and Properties of Aequorin, a Bioluminescent Protein from the Luminous Hydromedusan,Aequorea
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June 1962 |
Green Fluorescent Protein Functions as a Reporter for Protein Localization in Escherichia coli
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July 2000 |
QM/MM: what have we learned, where are we, and where do we go from here?
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July 2006 |
Ab initio floating occupation molecular orbital-complete active space configuration interaction: An efficient approximation to CASSCF
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June 2010 |
Multiscale electrostatic embedding simulations for modeling structure and dynamics of molecules in solution: A tutorial review
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July 2020 |
Excited-State Electronic Structure with Configuration Interaction Singles and Tamm–Dancoff Time-Dependent Density Functional Theory on Graphical Processing Units
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May 2011 |
Nonadiabatic Ab Initio Molecular Dynamics with the Floating Occupation Molecular Orbital-Complete Active Space Configuration Interaction Method
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December 2017 |
The non-adiabatic nanoreactor: towards the automated discovery of photochemistry
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January 2021 |
Quantum Chemistry on Graphical Processing Units. 3. Analytical Energy Gradients, Geometry Optimization, and First Principles Molecular Dynamics
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August 2009 |
Umbrella sampling: Umbrella sampling
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May 2011 |
Green fluorescent protein as a marker for gene expression
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February 1994 |
Unmasking the cis-Stilbene Phantom State via Vacuum Ultraviolet Time-Resolved Photoelectron Spectroscopy and Ab Initio Multiple Spawning
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July 2021 |
Analytic formulation of derivative coupling vectors for complete active space configuration interaction wavefunctions with floating occupation molecular orbitals
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November 2016 |
Multidimensional Replica Exchange Molecular Dynamics Yields a Converged Ensemble of an RNA Tetranucleotide
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November 2013 |
Open-Source Multi-GPU-Accelerated QM/MM Simulations with AMBER and QUICK
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April 2021 |
Fast Implementation of the Nudged Elastic Band Method in AMBER
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July 2019 |
LAMMPS - a flexible simulation tool for particle-based materials modeling at the atomic, meso, and continuum scales
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February 2022 |
An extensible interface for QM/MM molecular dynamics simulations with AMBER
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October 2013 |
Quantum Chemistry on Graphical Processing Units. 2. Direct Self-Consistent-Field Implementation
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March 2009 |
Ambient-Potential Composite Ewald Method for ab Initio Quantum Mechanical/Molecular Mechanical Molecular Dynamics Simulation
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May 2016 |
OpenMM 7: Rapid development of high performance algorithms for molecular dynamics
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July 2017 |
TeraChem Cloud: A High-Performance Computing Service for Scalable Distributed GPU-Accelerated Electronic Structure Calculations
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April 2020 |
Fluorescent properties of model chromophores of tyrosine-66 substituted mutants of Aequorea green fluorescent protein (GEP)
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July 1998 |
Resolving the ultrafast dynamics of the anionic green fluorescent protein chromophore in water
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January 2021 |