Genomes OnLine Database (GOLD) v.8: overview and updates

Mukherjee, Supratim; Stamatis, Dimitri; Bertsch, Jon; Ovchinnikova, Galina; Sundaramurthi, Jagadish  Chandrabose; Lee, Janey; Kandimalla, Mahathi; Chen, I-Min A.; Kyrpides, Nikos C.; Reddy, T. B. K.

doi:10.1093/nar/gkaa983

Title: Genomes OnLine Database (GOLD) v.8: overview and updates

Journal Article · Thu Nov 05 00:00:00 EST 2020 · Nucleic Acids Research

DOI:https://doi.org/10.1093/nar/gkaa983· OSTI ID:1846952

Mukherjee, Supratim ^[1]; Stamatis, Dimitri ^[1]; Bertsch, Jon ^[1]; Ovchinnikova, Galina ^[1];

^[1]; Lee, Janey ^[1]; Kandimalla, Mahathi ^[1];

^[1]; Kyrpides, Nikos C. ^[1];

^[1]

Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)

The Genomes OnLine Database (GOLD) (https://gold.jgi.doe.gov/) is a manually curated, daily updated collection of genome projects and their metadata accumulated from around the world. The current version of the database includes over 1.17 million entries organized broadly into Studies (45 770), Organisms (387 382) or Biosamples (101 207), Sequencing Projects (355 364) and Analysis Projects (283 481). These four levels contain over 600 metadata fields, which includes 76 controlled vocabulary (CV) tables containing 3873 terms. GOLD provides an interactive web user interface for browsing and searching by a wide range of project and metadata fields. Users can enter details about their own projects in GOLD, which acts as a gatekeeper to ensure that metadata is accurately documented before submitting sequence information to the Integrated Microbial Genomes (IMG) system for analysis. In order to maintain a reference dataset for use by members of the scientific community, GOLD also imports projects from public repositories such as GenBank and SRA. Here, the current status of the database, along with recent updates and improvements are described in this manuscript.

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Research Organization:: Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC)

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1846952

Journal Information:: Nucleic Acids Research, Vol. 49, Issue D1; ISSN 0305-1048

Publisher:: Oxford University PressCopyright Statement

Country of Publication:: United States

Language:: English

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