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Title: Internal conversion of the anionic GFP chromophore: in and out of the I-twisted S 1 /S 0 conical intersection seam

Journal Article · · Chemical Science
DOI:https://doi.org/10.1039/D1SC05849E· OSTI ID:1834650

The functional diversity of the green fluorescent protein (GFP) family is intimately connected to the interplay between competing photo-induced transformations of the chromophore motif, anionic p-hydroxybenzylidene-2,3-dimethylimidazolinone (HBDI-). Its ability to undergo Z/E-isomerization is of particular importance for super-resolution microscopy and emerging opportunities in optogenetics. Yet, key dynamical features of the underlying internal conversion process in the native HBDI- chromophore remain largely elusive. We investigate the intrinsic excited-state behavior of isolated HBDI- to resolve competing decay pathways and map out the factors governing efficiency and the stereochemical outcome of photoisomerization. Based on non-adiabatic dynamics simulations, we demonstrate that non-selective progress along the two bridge-torsional (i.e., phenolate, P, or imidazolinone, I) pathways accounts for the three decay constants reported experimentally, leading to competing ultrafast relaxation primarily along the I-twisted pathway and S1 trapping along the P-torsion. The majority of the population (~70%) is transferred to S0 in the vicinity of two approximately enantiomeric minima on the I-twisted intersection seam (MECI-Is). Despite their sloped, reactant-biased topographies (suggesting low photoproduct yields), we find that decay through these intersections leads to products with a surprisingly high quantum yield of ~30%. This demonstrates that E-isomer generation results at least in part from direct isomerization on the excited state. A photoisomerization committor analysis reveals a difference in intrinsic photoreactivity of the two MECI-Is and that the observed photoisomerization is the combined result of two effects: early, non-statistical dynamics around the less reactive intersection followed by later, near-statistical behavior around the more reactive MECI-I. Our work offers new insight into internal conversion of HBDI- that both establishes the intrinsic properties of the chromophore and enlightens principles for the design of chromophore derivatives and protein variants with improved photoswitching properties.

Research Organization:
SLAC National Accelerator Laboratory (SLAC), Menlo Park, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES); Villum Foundation
Grant/Contract Number:
AC02-76SF00515; VKR023371
OSTI ID:
1834650
Alternate ID(s):
OSTI ID: 1838671
Journal Information:
Chemical Science, Journal Name: Chemical Science Vol. 13 Journal Issue: 2; ISSN 2041-6520
Publisher:
Royal Society of Chemistry (RSC)Copyright Statement
Country of Publication:
United Kingdom
Language:
English

References (78)

GPU-Accelerated State-Averaged Complete Active Space Self-Consistent Field Interfaced with Ab Initio Multiple Spawning Unravels the Photodynamics of Provitamin D 3 journal June 2016
Internal Conversion in the Chromophore of the Green Fluorescent Protein:  Temperature Dependence and Isoviscosity Analysis journal April 2003
Approximately diabatic states from block diagonalization of the electronic Hamiltonian journal December 1988
Reversible Photoisomerization of the Isolated Green Fluorescent Protein Chromophore journal May 2018
Imaging Intracellular Fluorescent Proteins at Nanometer Resolution journal September 2006
A two-state model of twisted intramolecular charge-transfer in monomethine dyes journal October 2012
Ab Initio Nonadiabatic Quantum Molecular Dynamics journal February 2018
The Green Fluorescent Protein journal June 1998
Diffraction-unlimited all-optical imaging and writing with a photochromic GFP journal September 2011
Probing the Photochemical Funnel of a Retinal Chromophore Model via Zero-Point Energy Sampling Semiclassical Dynamics journal May 2004
The Ultrafast Photoisomerizations of Rhodopsin and Bathorhodopsin Are Modulated by Bond Length Alternation and HOOP Driven Electronic Effects
  • Schapiro, Igor; Ryazantsev, Mikhail Nikolaevich; Frutos, Luis Manuel
  • Journal of the American Chemical Society, Vol. 133, Issue 10 https://doi.org/10.1021/ja1056196
journal March 2011
Quantum Chemistry on Graphical Processing Units. 1. Strategies for Two-Electron Integral Evaluation journal January 2008
Origin, Nature, and Fate of the Fluorescent State of the Green Fluorescent Protein Chromophore at the CASPT2//CASSCF Resolution journal May 2004
On/off blinking and switching behaviour of single molecules of green fluorescent protein journal July 1997
Block diagonalisation of Hermitian matrices journal July 1989
Analytical Derivative Coupling for Multistate CASPT2 Theory journal May 2017
Communication: Autodetachment versus internal conversion from the S 1 state of the isolated GFP chromophore anion journal August 2013
A diabatic three-state representation of photoisomerization in the green fluorescent protein chromophore journal January 2009
T RANSITION P ATH S AMPLING : Throwing Ropes Over Rough Mountain Passes, in the Dark journal October 2002
Gaussian basis sets for use in correlated molecular calculations. I. The atoms boron through neon and hydrogen journal January 1989
An Introduction to the Bootstrap book January 1993
Structure of the chromophore of Aequorea green fluorescent protein journal August 1979
Viscosity-Dependent Fluorescence Decay of the GFP Chromophore in Solution Due to Fast Internal Conversion journal August 2002
A systematic model study quantifying how conical intersection topography modulates photochemical reactions journal January 2020
Comparison of full multiple spawning, trajectory surface hopping, and converged quantum mechanics for electronically nonadiabatic dynamics journal July 2001
Conical Intersections, charge localization, and photoisomerization pathway selection in a minimal model of a degenerate monomethine dye journal December 2009
The Fluorescent Toolbox for Assessing Protein Location and Function journal April 2006
A direct-compatible formulation of the coupled perturbed complete active space self-consistent field equations on graphical processing units journal May 2017
Vibrationally Resolved Photoelectron Spectroscopy of the Model GFP Chromophore Anion Revealing the Photoexcited S 1 State Being Both Vertically and Adiabatically Bound against the Photodetached D 0 Continuum journal June 2014
TeraChem: Accelerating electronic structure and ab initio molecular dynamics with graphical processing units journal June 2020
The role of HOOP-modes in the ultrafast photo-isomerization of retinal models journal June 2008
The Growing and Glowing Toolbox of Fluorescent and Photoactive Proteins journal February 2017
Origin of the Intrinsic Fluorescence of the Green Fluorescent Protein journal June 2017
Direct and Indirect Electron Emission from the Green Fluorescent Protein Chromophore journal September 2012
Chromophore twisting in the excited state of a photoswitchable fluorescent protein captured by time-resolved serial femtosecond crystallography journal September 2017
Hydrogen Bond Fluctuations Control Photochromism in a Reversibly Photo-Switchable Fluorescent Protein journal November 2015
Ab Initio Molecular Dynamics of Excited-State Intramolecular Proton Transfer Using Multireference Perturbation Theory journal November 2007
Breaking the diffraction barrier in fluorescence microscopy at low light intensities by using reversibly photoswitchable proteins journal November 2005
Dynamics starting at a conical intersection: Application to the photochemistry of pyrrole journal July 2009
Electrostatic control of photoisomerization pathways in proteins journal January 2020
Extraction, Purification and Properties of Aequorin, a Bioluminescent Protein from the Luminous Hydromedusan,Aequorea journal June 1962
Photoelectron spectroscopy of the model GFP chromophore anion journal January 2012
Taking the green fluorescence out of the protein: dynamics of the isolated GFP chromophore anion journal January 2013
GFP Family: Structural Insights into Spectral Tuning journal August 2008
The fluorescent protein palette: tools for cellular imaging journal January 2009
The structure and function of fluorescent proteins journal January 2009
Chemical nature of the light emitter of the Aequorea green fluorescent protein journal November 1996
Ultrafast dual photoresponse of isolated biological chromophores: link to the photoinduced mode-specific non-adiabatic dynamics in proteins journal January 2013
Split Green Fluorescent Proteins: Scope, Limitations, and Outlook journal May 2019
Photoinduced Chemistry in Fluorescent Proteins: Curse or Blessing? journal March 2016
Communication: Extended multi-state complete active space second-order perturbation theory: Energy and nuclear gradients journal August 2011
Photodetachment Spectra of Deprotonated Fluorescent Protein Chromophore Anions journal July 2012
Product formation in rhodopsin by fast hydrogen motions journal January 2011
Analytical State-Average Complete-Active-Space Self-Consistent Field Nonadiabatic Coupling Vectors: Implementation with Density-Fitted Two-Electron Integrals and Application to Conical Intersections journal July 2016
Photoswitchable fluorescent proteins enable monochromatic multilabel imaging and dual color fluorescence nanoscopy journal August 2008
Unified Model for Photophysical and Electro-Optical Properties of Green Fluorescent Proteins journal August 2019
Mechanism and bottlenecks in strand photodissociation of split green fluorescent proteins (GFPs) journal February 2017
Local fitness landscape of the green fluorescent protein journal May 2016
Ab Initio Multiple Spawning:  Photochemistry from First Principles Quantum Molecular Dynamics journal June 2000
Crystal Structure of the Aequorea victoria Green Fluorescent Protein journal September 1996
Quantum Chemistry on Graphical Processing Units. 3. Analytical Energy Gradients, Geometry Optimization, and First Principles Molecular Dynamics journal August 2009
Exploring the Conical Intersection Seam: The Seam Space Nudged Elastic Band Method journal December 2012
On-the-Fly CASPT2 Surface-Hopping Dynamics journal July 2017
Protonic Gating of Excited-State Twisting and Charge Localization in GFP Chromophores: A Mechanistic Hypothesis for Reversible Photoswitching journal February 2010
Evidence for a vibrational phase-dependent isotope effect on the photochemistry of vision journal March 2018
Modelling vibrational coherence in the primary rhodopsin photoproduct journal December 2012
An atomic orbital-based formulation of analytical gradients and nonadiabatic coupling vector elements for the state-averaged complete active space self-consistent field method on graphical processing units journal October 2015
The Lineshape of the Electronic Spectrum of the Green Fluorescent Protein Chromophore, Part I: Gas Phase journal September 2014
Structure and mechanism of the reversible photoswitch of a fluorescent protein journal August 2005
Bond torsion affects the product distribution in the photoreaction of retinal model chromophores journal November 2005
Primary structure of the Aequorea victoria green-fluorescent protein journal February 1992
Quantum Chemistry on Graphical Processing Units. 2. Direct Self-Consistent-Field Implementation journal March 2009
Mechanism of the redox reaction of the Aequorea green fluorescent protein (GFP) journal April 1997
Non-adiabatic transition probability dependence on conical intersection topography journal November 2016
Deactivation Pathways of an Isolated Green Fluorescent Protein Model Chromophore Studied by Electronic Action Spectroscopy journal December 2009
Origin of states connected with twisted intramolecular charge shift in polymethine cations: a simple analytical treatment journal January 1999
Construction of Some Molecular Orbitals to Be Approximately Invariant for Changes from One Molecule to Another journal April 1960
Non-adiabatic dynamics of isolated green fluorescent protein chromophore anion journal December 2014