skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Fixed-target serial femtosecond crystallography using in cellulo grown microcrystals

Journal Article · · IUCrJ

The crystallization of recombinant proteins in living cells is an exciting new approach in structural biology. Recent success has highlighted the need for fast and efficient diffraction data collection, optimally directly exposing intact crystal-containing cells to the X-ray beam, thus protecting the in cellulo crystals from environmental challenges. Serial femtosecond crystallography (SFX) at free-electron lasers (XFELs) allows the collection of detectable diffraction even from tiny protein crystals, but requires very fast sample exchange to utilize each XFEL pulse. Here, an efficient approach is presented for high-resolution structure elucidation using serial femtosecond in cellulo diffraction of micometre-sized crystals of the protein HEX-1 from the fungus Neurospora crassa on a fixed target. Employing the fast and highly accurate Roadrunner II translation-stage system allowed efficient raster scanning of the pores of micro-patterned, single-crystalline silicon chips loaded with living, crystal-containing insect cells. Compared with liquid-jet and LCP injection systems, the increased hit rates of up to 30% and reduced background scattering enabled elucidation of the HEX-1 structure. Using diffraction data from only a single chip collected within 12 min at the Linac Coherent Light Source, a 1.8 Å resolution structure was obtained with significantly reduced sample consumption compared with previous SFX experiments using liquid-jet injection. This HEX-1 structure is almost superimposable with that previously determined using synchrotron radiation from single HEX-1 crystals grown by sitting-drop vapour diffusion, validating the approach. This study demonstrates that fixed-target SFX using micro-patterned silicon chips is ideally suited for efficient in cellulo diffraction data collection using living, crystal-containing cells, and offers huge potential for the straightforward structure elucidation of proteins that form intracellular crystals at both XFELs and synchrotron sources.

Sponsoring Organization:
USDOE
OSTI ID:
1811716
Journal Information:
IUCrJ, Journal Name: IUCrJ Vol. 8 Journal Issue: 4; ISSN 2052-2525
Publisher:
International Union of Crystallography (IUCr)Copyright Statement
Country of Publication:
United Kingdom
Language:
English

References (89)

In cellulo crystallization of Trypanosoma brucei IMP dehydrogenase enables the identification of genuine co-factors journal January 2020
CrystFEL : a software suite for snapshot serial crystallography journal March 2012
Serial Crystallography: Preface journal February 2020
The molecular organization of cypovirus polyhedra journal March 2007
Fixed target matrix for femtosecond time-resolved and in situ serial micro-crystallography journal August 2015
The hit-and-return system enables efficient time-resolved serial synchrotron crystallography journal October 2018
Serial crystallography on in vivo grown microcrystals using synchrotron radiation journal February 2014
Overview of the CCP 4 suite and current developments journal March 2011
Towards ETEM serial crystallography: Electron diffraction from liquid jets journal June 2011
Polyacrylamide injection matrix for serial femtosecond crystallography journal February 2019
Grease matrix as a versatile carrier of proteins for serial crystallography journal November 2014
Room-temperature macromolecular serial crystallography using synchrotron radiation journal May 2014
High-speed fixed-target serial virus crystallography journal June 2017
Accurate determination of segmented X-ray detector geometry journal January 2015
Low- Z polymer sample supports for fixed-target serial femtosecond X-ray crystallography journal June 2015
A nanosecond time-resolved XFEL analysis of structural changes associated with CO release from cytochrome c oxidase journal July 2017
High-Resolution Protein Structure Determination by Serial Femtosecond Crystallography journal May 2012
Structure of CPV17 polyhedrin determined by the improved analysis of serial femtosecond crystallographic data journal March 2015
Ultracompact 3D microfluidics for time-resolved structural biology journal January 2020
A pipeline for structure determination of in vivo -grown crystals using in cellulo diffraction journal March 2016
Woronin bodies of filamentous fungi journal March 1987
Towards automated crystallographic structure refinement with phenix.refine journal March 2012
Protein crystal structure obtained at 2.9 A resolution from injecting bacterial cells into an X-ray free-electron laser beam journal August 2014
Serial crystallography at synchrotrons and X-ray lasers journal February 2017
Mix-and-diffuse serial synchrotron crystallography journal October 2017
Serial femtosecond crystallography: the first five years journal February 2015
A high-transparency, micro-patternable chip for X-ray diffraction analysis of microcrystals under native growth conditions journal September 2015
A Bright Future for Serial Femtosecond Crystallography with XFELs journal September 2017
Viscous hydrophilic injection matrices for serial crystallography journal May 2017
Recent results in time resolved serial femtosecond crystallography at XFELs journal December 2020
A novel inert crystal delivery medium for serial femtosecond crystallography journal June 2015
Time-resolved serial crystallography captures high-resolution intermediates of photoactive yellow protein journal December 2014
Serial time-resolved crystallography of photosystem II using a femtosecond X-ray laser journal July 2014
Serial synchrotron crystallography for time-resolved structural biology journal December 2020
Potential for biomolecular imaging with femtosecond X-ray pulses journal August 2000
XDS journal January 2010
Inference of Macromolecular Assemblies from Crystalline State journal September 2007
Rapid screening of in cellulo grown protein crystals via a small-angle X-ray scattering/X-ray powder diffraction synergistic approach journal September 2020
Indexing in single-crystal diffractometry with an obstinate list of reflections journal April 1992
In vivo crystallography at X-ray free-electron lasers: the next generation of structural biology?
  • Gallat, François-Xavier; Matsugaki, Naohiro; Coussens, Nathan P.
  • Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 369, Issue 1647 https://doi.org/10.1098/rstb.2013.0497
journal July 2014
Strategies for sample delivery for femtosecond crystallography journal February 2019
Serial millisecond crystallography for routine room-temperature structure determination at synchrotrons journal September 2017
Real-time investigation of dynamic protein crystallization in living cells journal July 2015
OnDA : online data analysis and feedback for serial X-ray imaging journal May 2016
Solvent minimization induces preferential orientation and crystal clustering in serial micro-crystallography on micro-meshes, in situ plates and on a movable crystal conveyor belt journal October 2014
Mixing injector enables time-resolved crystallography with high hit rate at X-ray free electron lasers journal August 2016
In vivo protein crystallization in combination with highly brilliant radiation sources offers novel opportunities for the structural analysis of post-translationally modified eukaryotic proteins journal July 2015
Recent developments in CrystFEL journal March 2016
Rapid sample delivery for megahertz serial crystallography at X-ray FELs journal July 2018
An in cellulo-derived structure of PAK4 in complex with its inhibitor Inka1 journal November 2015
Protein crystallization in living cells journal June 2018
hex-1, a Gene Unique to Filamentous Fungi, Encodes the Major Protein of the Woronin Body and Functions as a Plug for Septal Pores journal December 2000
Low-dose fixed-target serial synchrotron crystallography journal March 2017
High-throughput imaging of heterogeneous cell organelles with an X-ray laser journal November 2014
1 kHz fixed-target serial crystallography using a multilayer monochromator and an integrating pixel detector journal August 2019
The Macromolecular Femtosecond Crystallography Instrument at the Linac Coherent Light Source journal February 2019
Single Particle X-ray Diffractive Imaging journal January 2008
Lipidic cubic phase injector facilitates membrane protein serial femtosecond crystallography journal February 2014
MolProbity : all-atom structure validation for macromolecular crystallography journal December 2009
Fixed-target protein serial microcrystallography with an x-ray free electron laser journal August 2014
A HEX-1 crystal lattice required for Woronin body function in Neurospora crassa journal March 2003
Features and development of Coot journal March 2010
Acoustic methods for high-throughput protein crystal mounting at next-generation macromolecular crystallographic beamlines journal August 2013
New baculovirus expression tools for recombinant protein complex production journal October 2010
High-density grids for efficient data collection from multiple crystals journal January 2016
Time-resolved crystallography reveals allosteric communication aligned with molecular breathing journal September 2019
Crystallography on a chip journal February 2012
Room-temperature macromolecular crystallography using a micro-patterned silicon chip with minimal background scattering journal May 2016
The next ten years of X-ray science journal January 2017
Pink-beam serial crystallography journal November 2017
Femtosecond X-ray diffraction from two-dimensional protein crystals journal February 2014
Megahertz serial crystallography journal October 2018
Double-flow focused liquid injector for efficient serial femtosecond crystallography journal March 2017
A micro-patterned silicon chip as sample holder for macromolecular crystallography experiments with minimal background scattering journal May 2015
The HARE chip for efficient time-resolved serial synchrotron crystallography journal February 2020
A three-dimensional movie of structural changes in bacteriorhodopsin journal December 2016
A Diffraction-Quality Protein Crystal Processed as an Autophagic Cargo journal April 2015
Protein microcrystallography using synchrotron radiation journal August 2017
Fabrication of ultrathin suspended polymer membranes as supports for serial protein crystallography journal June 2020
Diffraction before destruction journal July 2014
A Simple Method of Estimating Fifty per cent Endpoints12 journal May 1938
Macromolecular diffractive imaging using imperfect crystals journal February 2016
Atomic structure of granulin determined from native nanocrystalline granulovirus using an X-ray free-electron laser journal February 2017
In vivo protein crystallization opens new routes in structural biology journal January 2012
Gas dynamic virtual nozzle for generation of microscopic droplet streams journal September 2008
The integration of macromolecular diffraction data journal December 2005
Phaser crystallographic software journal July 2007
Crystallographic model quality at a glance journal February 2009
Natively Inhibited Trypanosoma brucei Cathepsin B Structure Determined by Using an X-ray Laser journal November 2012