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Title: Characterization of the Asian Citrus Psyllid Transcriptome

Journal Article · · Journal of Genomics
DOI:https://doi.org/10.7150/jgen.7692· OSTI ID:1629278
 [1];  [2];  [3];  [4];  [1];  [4];  [5];  [1];  [1];  [2];  [2];  [6];  [3];  [3];  [7];  [7];  [8];  [9];  [10];  [11] more »;  [11];  [12];  [11] « less
  1. Genformatic, LLC, Austin, TX (United States)
  2. Univ. of Nebraska, Omaha, NE (United States). Dept. of Biology
  3. Illumina, Inc., Hayward, CA (United States)
  4. Cornell Univ., Ithaca, NY (United States). Dept. of Plant Pathology and Plant-Microbe Biology
  5. Texas A & M Univ., College Station, TX (United States). Dept. of Entomology
  6. Heteroskedastic, Inc., Arvada, CO (United States)
  7. Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
  8. US Dept. of Agriculture (USDA), Columbia, MO (United States). Agricultural Research Service
  9. Univ. of South Florida, Tampa, FL (United States). School of Information
  10. Univ. of Texas, Tyler, TX (United States)
  11. US Dept. of Agriculture (USDA), Fort Pierce, FL (United States). Agricultural Research Service
  12. Univ. of Nebraska, Omaha, NE (United States). Dept. of Biology; Univ. of Nebraska Medical Center, Omaha, NE (United States). Dept. of Genetics, Cell Biology and Anatomy
+ Show Author Affiliations

The Asian citrus psyllid, Diaphorina citri Kuwayama (Hemiptera: Psyllidae) is a vector for the causative agents of Huanglongbing, which threatens citrus production worldwide. This study reports and discusses the first D. citri transcriptomes, encompassing the three main life stages of D. citri, egg, nymph and adult. The transcriptomes were annotated using Gene Ontology (GO) and insecticide-related genes within each life stage were identified to aid the development of future D. citri insecticides. Transcriptome assemblies and other sequence data are available for download at the International Asian Citrus Psyllid Genome Consortium website [http://psyllid.org/download] and at NCBI [http://www.ncbi.nlm.nih.gov/bioproject/29447].

Research Organization:
Los Alamos National Laboratory (LANL), Los Alamos, NM (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division; National Institutes of Health (NIH); National Center for Research Resources (NCRR); National Institute of General Medical Sciences (NIGMS); USDA; Agricultural Research Service (ARS); Citrus Research Board, Inc.
OSTI ID:
1629278
Journal Information:
Journal of Genomics, Vol. 2; ISSN 1839-9940
Publisher:
IvyspringCopyright Statement
Country of Publication:
United States
Language:
English

References (7)

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research journal August 2005
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences journal May 2006
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes journal March 2007
Fast and accurate short read alignment with Burrows-Wheeler transform journal May 2009
Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels journal February 2012
CD-HIT: accelerated for clustering the next-generation sequencing data journal October 2012
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs journal February 2008

Cited By (15)

Molecular Identification, Expression, and Functional Analysis of a General Odorant-Binding Protein 1 of Asian Citrus Psyllid journal December 2018
Selection of Reference Genes for Optimal Normalization of Quantitative Real-Time Polymerase Chain Reaction Results for Diaphorina citri Adults journal October 2018
The influence of bacteria on multitrophic interactions among plants, psyllids, and pathogen journal July 2017
Insecticide toxicity associated with detoxification enzymes and genes related to transcription of cuticular melanization among color morphs of Asian citrus psyllid journal April 2018
Effect of silencing a boule homologue on the survival and reproduction of Asian citrus psyllid Diaphorina citri journal July 2018
The transcriptional landscape of insect galls: psyllid (Hemiptera) gall formation in Hawaiian Metrosideros polymorpha (Myrtaceae) journal November 2015
Combining 'omics and microscopy to visualize interactions between the Asian citrus psyllid vector and the Huanglongbing pathogen Candidatus Liberibacter asiaticus in the insect gut journal June 2017
Lessons from One Fastidious Bacterium to Another: What Can We Learn about Liberibacter Species from Xylella fastidiosa journal September 2019
Morphological abnormalities and cell death in the Asian citrus psyllid (Diaphorina citri) midgut associated with Candidatus Liberibacter asiaticus journal September 2016
Asian Citrus Psyllid Expression Profiles Suggest Candidatus Liberibacter Asiaticus-Mediated Alteration of Adult Nutrition and Metabolism, and of Nymphal Development and Immunity journal June 2015
Characterization of a Recombinant Cathepsin B-Like Cysteine Peptidase from Diaphorina citri Kuwayama (Hemiptera: Liviidae): A Putative Target for Control of Citrus Huanglongbing journal December 2015
Using NextRAD sequencing to infer movement of herbivores among host plants journal May 2017
Interactions “Candidatus Liberibacter solanacearum”—Bactericera cockerelli: Haplotype Effect on Vector Fitness and Gene Expression Analyses journal June 2016
Annotation of the Asian Citrus Psyllid Genome Reveals a Reduced Innate Immune System journal November 2016
Identification of Genes Putatively Involved in Chitin Metabolism and Insecticide Detoxification in the Rice Leaf Folder (Cnaphalocrocis medinalis) Larvae through Transcriptomic Analysis journal September 2015

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Related Subjects

59 BASIC BIOLOGICAL SCIENCES
Asian Citrus Psyllid
Diaphorina citri Kuwayama