DNest4: Diffusive Nested Sampling in C++ and Python
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preprint
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January 2016 |
Shifting the genomic gold standard for the prokaryotic species definition
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journal
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October 2009 |
Phylogeny and taxonomy of the food-borne pathogen Clostridium botulinum and its neurotoxins
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journal
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January 1998 |
Effect of pH and NaCl on growth from spores of non‐proteolytic Clostridium botulinum at chill temperature
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journal
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February 1997 |
Phylogenetic analysis of Clostridium botulinum type A by multi-locus sequence typing
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journal
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August 2008 |
Fast and accurate short read alignment with Burrows-Wheeler transform
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journal
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May 2009 |
Food Microbiology
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book
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December 2012 |
Evidence that Plasmid-Borne Botulinum Neurotoxin Type B Genes Are Widespread among Clostridium botulinum Serotype B Strains
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journal
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March 2009 |
The species concept for prokaryotes
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journal
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January 2001 |
The Northern Arizona SNP Pipeline (NASP): accurate, flexible, and rapid identification of SNPs in WGS datasets
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posted_content
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January 2016 |
BIGSdb: Scalable analysis of bacterial genome variation at the population level
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journal
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December 2010 |
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
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journal
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March 2010 |
A case of infant botulism with a possible link to infant formula milk powder: evidence for the presence of more than one strain of Clostridium botulinum in clinical specimens and food
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journal
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August 2005 |
Commensal Pseudomonas protect Arabidopsis thaliana from a coexisting pathogen via multiple lineage-dependent mechanisms
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December 2021 |
Climatic oscillations in Quaternary have shaped the co-evolutionary patterns between the Norway spruce and its host-associated herbivore
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journal
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October 2020 |
Saccorhytus is an early ecdysozoan and not the earliest deuterostome
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journal
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August 2022 |
A novel algorithm and web-based tool for comparing two alternative phylogenetic trees
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journal
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October 2005 |
Food Microbiology
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journal
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November 1959 |
The large-scale blast score ratio (LS-BSR) pipeline: a method to rapidly compare genetic content between bacterial genomes
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journal
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January 2014 |
Genomic sequences of six botulinum neurotoxin-producing strains representing three clostridial species illustrate the mobility and diversity of botulinum neurotoxin genes
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journal
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March 2015 |
Mating pair stabilization mediates bacterial conjugation species specificity
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journal
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June 2022 |
GenBank
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journal
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December 2004 |
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
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journal
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May 2012 |
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
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journal
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October 2009 |
Basic local alignment search tool
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journal
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October 1990 |
Analysis of a unique Clostridium botulinum strain from the Southern hemisphere producing a novel type E botulinum neurotoxin subtype
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journal
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January 2012 |
Botulinum Toxin as a Biological Weapon: Medical and Public Health Management
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journal
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February 2001 |
A Rapid Bootstrap Algorithm for the RAxML Web Servers
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journal
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October 2008 |
Clostridium botulinum group III: a group with dual identity shaped by plasmids, phages and mobile elements
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journal
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April 2011 |
Presence of Clostridium botulinum spores in Matricaria chamomilla (chamomile) and its relationship with infant botulism
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journal
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February 2008 |
Functional Characterization of Botulinum Neurotoxin Serotype H as a Hybrid of Known Serotypes F and A (BoNT F/A)
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journal
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March 2015 |
Matplotlib: A 2D Graphics Environment
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journal
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January 2007 |
Environmental dissemination of pathogenic Listeria monocytogenes in flowing surface waters in Switzerland
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journal
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April 2021 |
Accurate and universal delineation of prokaryotic species
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journal
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July 2013 |
A user's guide to microbial challenge testing for ensuring the safety and stability of food products
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journal
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April 1993 |
How Many Bootstrap Replicates Are Necessary?
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journal
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March 2010 |
Historical and current perspectives on Clostridium botulinum diversity
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journal
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May 2015 |
Isolation and Functional Characterization of the Novel Clostridium botulinum Neurotoxin A8 Subtype
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journal
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February 2015 |
QUAST: quality assessment tool for genome assemblies
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journal
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February 2013 |
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
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journal
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May 2006 |
Comparison of Clostridium botulinum genomes shows the absence of cold shock protein coding genes in type E neurotoxin producing strains
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journal
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January 2013 |
High prevalence of Clostridium botulinum types A and B in honey samples detected by polymerase chain reaction
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journal
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January 2002 |
Circos: An information aesthetic for comparative genomics
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journal
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June 2009 |
Characterisation of non-toxigenic Clostridium spp. strains, to use as surrogates for non-proteolytic Clostridium botulinum in chilled food challenge testing
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journal
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January 2015 |
Genome sequence of a proteolytic (Group I) Clostridium botulinum strain Hall A and comparative analysis of the clostridial genomes
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journal
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June 2007 |
When Whole-Genome Alignments Just Won't Work: kSNP v2 Software for Alignment-Free SNP Discovery and Phylogenetics of Hundreds of Microbial Genomes
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journal
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December 2013 |
Targeted A-to-G base editing of chloroplast DNA in plants
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journal
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December 2022 |
Efficient DNA Fingerprinting of Clostridium botulinum Types A, B, E, and F by Amplified Fragment Length Polymorphism Analysis
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journal
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March 2005 |
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
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journal
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June 2010 |
CXCR4 signaling directs Igk recombination and the molecular mechanisms of late B lymphopoiesis
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journal
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September 2019 |
Clostridium botulinum Strain Af84 Contains Three Neurotoxin Gene Clusters: Bont/A2, bont/F4 and bont/F5
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journal
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April 2013 |
Study of the presence of the spores of Clostridium botulinum in honey in Brazil
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journal
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July 1999 |
phangorn: phylogenetic analysis in R
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journal
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December 2010 |
BayesHammer: Bayesian clustering for error correction in single-cell sequencing
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text
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January 2012 |
A Likelihood Approach to Estimating Phylogeny from Discrete Morphological Character Data
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journal
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November 2001 |
Implications of Genome-Based Discrimination between Clostridium botulinum Group I and Clostridium sporogenes Strains for Bacterial Taxonomy
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journal
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June 2015 |
Using Whole Genome Analysis to Examine Recombination across Diverse Sequence Types of Staphylococcus aureus
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journal
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July 2015 |
Whole-Genome Single-Nucleotide-Polymorphism Analysis for Discrimination of Clostridium botulinum Group I Strains
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journal
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January 2014 |
Search and clustering orders of magnitude faster than BLAST
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journal
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August 2010 |
Mutations in virus-derived small RNAs
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journal
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June 2020 |
Two Novel Toxin Variants Revealed by Whole-Genome Sequencing of 175 Clostridium botulinum Type E Strains
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journal
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August 2014 |
Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps
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journal
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January 2010 |
BLAT---The BLAST-Like Alignment Tool
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journal
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March 2002 |
Analysis of the genetic distribution among members of Clostridium botulinum group I using a novel multilocus sequence typing (MLST) assay
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journal
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January 2014 |
Past and future species definitions for Bacteria and Archaea
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journal
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June 2015 |
Trimmomatic: a flexible trimmer for Illumina sequence data
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journal
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April 2014 |
Clostridium botulinum Type F: Isolation from Venison Jerky
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journal
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January 1972 |
Ancient genomes reveal social and genetic structure of Late Neolithic Switzerland
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journal
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April 2020 |
Molecular Epidemiology of Infant Botulism in California and Elsewhere, 1976–2010
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journal
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June 2014 |
Mosaic structures of neurotoxins produced from Clostridium botulinum types C and D organisms
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journal
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June 1996 |
Prevalence of Clostridium botulinum type E in Finnish fish and fishery products
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journal
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June 1998 |
Analysis of the Neurotoxin Complex Genes in Clostridium botulinum A1-A4 and B1 Strains: BoNT/A3, /Ba4 and /B1 Clusters Are Located within Plasmids
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journal
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December 2007 |
Impact of recombination on bacterial evolution
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journal
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July 2010 |
A framework for variation discovery and genotyping using next-generation DNA sequencing data
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journal
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April 2011 |
Distribution of Botulinum Toxin-Producing Clostridia in Soils of Argentina
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journal
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July 2005 |
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
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journal
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January 2014 |
Prokka: rapid prokaryotic genome annotation
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journal
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March 2014 |
Recombination and insertion events involving the botulinum neurotoxin complex genes in Clostridium botulinum types A, B, E and F and Clostridium butyricumtype E strains
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journal
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October 2009 |
Clostridium botulinum Type F: Isolation from Venison Jerky
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journal
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August 1972 |
QIIME allows analysis of high-throughput community sequencing data
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journal
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April 2010 |
Horizontal gene transfer of toxin genes in Clostridium botulinum: Involvement of mobile elements and plasmids
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journal
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September 2011 |
Genomic and physiological variability within Group II (non-proteolytic) Clostridium botulinum
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journal
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January 2013 |
Distribution of Clostridium botulinum Type E Strains in Nunavik, Northern Quebec, Canada
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journal
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November 2012 |
PATRIC, the bacterial bioinformatics database and analysis resource
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journal
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November 2013 |
MUSCLE: multiple sequence alignment with high accuracy and high throughput
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journal
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March 2004 |
Infant gut microbiota characteristics generally do not modify effects of lipid-based nutrient supplementation on growth or inflammation: secondary analysis of a randomized controlled trial in Malawi
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journal
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September 2020 |
Genetic Diversity among Botulinum Neurotoxin-Producing Clostridial Strains
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journal
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November 2006 |
BayesHammer: Bayesian clustering for error correction in single-cell sequencing
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journal
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January 2013 |
Versatile and open software for comparing large genomes
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journal
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January 2004 |
Draft Genome Sequence of Comamonas aquatilis Strain LK (= CSUR P6418 = CECT 9772), Isolated from the Planarian Schmidtea mediterranea
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journal
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February 2021 |
Analysis of Clostridium botulinum Serotype E Strains by Using Multilocus Sequence Typing, Amplified Fragment Length Polymorphism, Variable-Number Tandem-Repeat Analysis, and Botulinum Neurotoxin Gene Sequencing
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journal
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October 2011 |
Genomic Epidemiology of Clostridium botulinum Isolates from Temporally Related Cases of Infant Botulism in New South Wales, Australia
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journal
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June 2015 |
Analysis of Neurotoxin Cluster Genes in Clostridium botulinum Strains Producing Botulinum Neurotoxin Serotype A Subtypes
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journal
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March 2008 |
Genomic Analysis of Clostridium botulinum Group II by Pulsed-Field Gel Electrophoresis
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journal
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February 1998 |
BLAT---The BLAST-Like Alignment Tool
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journal
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March 2002 |
Molecular Characterization of a Novel Botulinum Neurotoxin Type H Gene
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journal
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October 2013 |
Comparative Genomic Hybridization Analysis of Two Predominant Nordic Group I (Proteolytic) Clostridium botulinum Type B Clusters
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journal
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March 2009 |
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
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journal
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July 2010 |
Clostridium botulinum Group II Isolate Phylogenomic Profiling Using Whole-Genome Sequence Data
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journal
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June 2015 |
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
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journal
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November 2014 |
Clostridium botulinum Strains Producing BoNT/F4 or BoNT/F5
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journal
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March 2014 |
Draft Genome Sequence of Medusavirus Stheno, Isolated from the Tatakai River of Uji, Japan
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journal
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January 2021 |
Isolation of Clostridium botulinum from Honey
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journal
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February 1979 |