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The Conformational Free Energy Landscape of β- d -Glucopyranose. Implications for Substrate Preactivation in β-Glucoside Hydrolases
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Carbohydrate Polymers at the Center of Life’s Origins: The Importance of Molecular Processivity
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The binding specificity and affinity determinants of family 1 and family 3 cellulose binding modules
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Multiconfiguration thermodynamic integration
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Cellulase digestibility of pretreated biomass is limited by cellulose accessibility
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The Active Site of Cellobiohydrolase Cel6A from Trichoderma r eesei : The Roles of Aspartic Acids D221 and D175
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August 2002 |
Applications of computational science for understanding enzymatic deconstruction of cellulose
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April 2011 |
Examination of the α-Chitin Structure and Decrystallization Thermodynamics at the Nanoscale
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April 2011 |
Crystallographic evidence for substrate ring distortion and protein conformational changes during catalysis in cellobiohydrolase Ce16A from Trichoderma reesei
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September 1999 |
Molecular-Level Origins of Biomass Recalcitrance: Decrystallization Free Energies for Four Common Cellulose Polymorphs
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April 2011 |
Mechanism of initial rapid rate retardation in cellobiohydrolase catalyzed cellulose hydrolysis
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April 2010 |
A Simple Model System for the Study of Carbohydrate−Aromatic Interactions
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March 2007 |
Processivity, Synergism, and Substrate Specificity of Thermobifida fusca Cel6B
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September 2009 |
Importance of Exposed Aromatic Residues in Chitinase B from Serratia marcescens 2170 for Crystalline Chitin Hydrolysis
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August 2004 |
High Speed Atomic Force Microscopy Visualizes Processive Movement of Trichoderma reesei Cellobiohydrolase I on Crystalline Cellulose
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October 2009 |
Biomass Recalcitrance: Engineering Plants and Enzymes for Biofuels Production
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Conformational analysis of the anomeric forms of sophorose, laminarabiose, and cellobiose using MM3
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Molecular Recognition of Saccharides by Proteins. Insights on the Origin of the Carbohydrate−Aromatic Interactions
- Fernández-Alonso, María del Carmen; Cañada, Francisco Javier; Jiménez-Barbero, Jesús
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Journal of the American Chemical Society, Vol. 127, Issue 20
https://doi.org/10.1021/ja051020+
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The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics
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Puckering Coordinates of Monocyclic Rings by Triangular Decomposition
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Chemical Biology of the Sugar Code
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May 2004 |
Sweet spots in functional glycomics
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April 2006 |
Deconstruction of Lignocellulosic Biomass to Fuels and Chemicals
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July 2011 |
Stereochemical course of hydrolysis and hydration reactions catalysed by cellobiohydrolases I and II from Trichoderma reesei
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April 1990 |
The three-dimensional crystal structure of the catalytic core of cellobiohydrolase I from Trichoderma reesei
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July 1994 |
Visualisation of cyclic and multi-branched molecules with VMD
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September 2009 |
Computational simulations of the Trichoderma reesei cellobiohydrolase I acting on microcrystalline cellulose Iβ: the enzyme–substrate complex
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October 2009 |
Aromatic-Carbohydrate Interactions: An NMR and Computational Study of Model Systems
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August 2008 |
Restructuring the Crystalline Cellulose Hydrogen Bond Network Enhances Its Depolymerization Rate
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July 2011 |
Carbohydrate recognition systems: functional triads in cell—cell interactions
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October 1996 |
Probing Carbohydrate Product Expulsion from a Processive Cellulase with Multiple Absolute Binding Free Energy Methods
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Quantum Mechanics/Molecular Mechanics Modeling of Substrate-Assisted Catalysis in Family 18 Chitinases: Conformational Changes and the Role of Asp142 in Catalysis in ChiB
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May 2011 |
Evolutionary considerations in relating oligosaccharide diversity to biological function
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August 1999 |
Enthalpic Nature of the CH/π Interaction Involved in the Recognition of Carbohydrates by Aromatic Compounds, Confirmed by a Novel Interplay of NMR, Calorimetry, and Theoretical Calculations
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Imaging the Enzymatic Digestion of Bacterial Cellulose Ribbons Reveals the Endo Character of the Cellobiohydrolase Cel6A from Humicola insolens and Its Mode of Synergy with Cellobiohydrolase Cel7A
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April 2000 |
Extending the treatment of backbone energetics in protein force fields: Limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations
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Aromatic residues within the substrate-binding cleft of Bacillus circulans chitinase A1 are essential for hydrolysis of crystalline chitin
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November 2003 |
Engineering the Exo-loop of Trichoderma reesei Cellobiohydrolase, Cel7A. A comparison with Phanerochaete chrysosporium Cel7D
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Lectins: Carbohydrate-Specific Proteins That Mediate Cellular Recognition †
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Determination of substrate binding energies in individual subsites of a family 18 chitinase
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Three-dimensional structure of cellobiohydrolase II from Trichoderma reesei
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Protein–carbohydrate interactions: learning lessons from nature
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Siglecs and their roles in the immune system
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Costs and benefits of processivity in enzymatic degradation of recalcitrant polysaccharides
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Clusters, bundles, arrays and lattices: novel mechanisms for lectin–saccharide-mediated cellular interactions
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Identification of Amino Acids Responsible for Processivity in a Family 1 Carbohydrate-Binding Module from a Fungal Cellulase
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January 2007 |
Structure and function of Humicola insolens family 6 cellulases: structure of the endoglucanase, Cel6B, at 1.6 Å resolution
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May 2000 |
IR-Spectral Signatures of Aromatic–Sugar Complexes: Probing Carbohydrate–Protein Interactions
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May 2007 |
Tryptophan 272: an essential determinant of crystalline cellulose degradation by Trichoderma reesei cellobiohydrolase Cel6A
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CHARMM Additive All-Atom Force Field for Glycosidic Linkages between Hexopyranoses
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Decrystallization of Oligosaccharides from the Cellulose Iβ Surface with Molecular Simulation
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June 2011 |
Carbohydrate−π Interactions: What Are They Worth?
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November 2008 |
Structural Basis of Lectin-Carbohydrate Recognition
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Mapping glycoside hydrolase substrate subsites by isothermal titration calorimetry
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July 2004 |
Structure of a two-domain chitotriosidase from Serratia marcescens at 1.9-A resolution
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May 2000 |
CHARMM Additive All-Atom Force Field for Carbohydrate Derivatives and Its Utility in Polysaccharide and Carbohydrate–Protein Modeling
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August 2011 |
Dissecting factors that contribute to ligand-binding energetics for family 18 chitinases
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November 2010 |
Effect of glycosylation on protein folding: A close look at thermodynamic stabilization
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June 2008 |
Processivity of Cellobiohydrolases Is Limited by the Substrate
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How the walls come crumbling down: recent structural biochemistry of plant polysaccharide degradation
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Statistical Mechanics of Fluid Mixtures
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VMD: Visual molecular dynamics
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Free energy calculations: Applications to chemical and biochemical phenomena
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November 1993 |
Surface Plasmon Resonance Imaging Studies of Protein-Carbohydrate Interactions
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Structure and function of Humicola insolens family 6 cellulases: structure of the endoglucanase, Cel6B, at 1.6 Å resolution
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May 2000 |