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Title: Anthropogenic N deposition alters soil organic matter biochemistry and microbial communities on decaying fine roots

Journal Article · · Global Change Biology
DOI:https://doi.org/10.1111/gcb.14770· OSTI ID:1557335

Abstract Fine root litter is a primary source of soil organic matter (SOM), which is a globally important pool of C that is responsive to climate change. We previously established that ~20 years of experimental nitrogen (N) deposition has slowed fine root decay and increased the storage of soil carbon (C; +18%) across a widespread northern hardwood forest ecosystem. However, the microbial mechanisms that have directly slowed fine root decay are unknown. Here, we show that experimental N deposition has decreased the relative abundance of Agaricales fungi (−31%) and increased that of partially ligninolytic Actinobacteria (+24%) on decaying fine roots. Moreover, experimental N deposition has increased the relative abundance of lignin‐derived compounds residing in SOM (+53%), and this biochemical response is significantly related to shifts in both fungal and bacterial community composition. Specifically, the accumulation of lignin‐derived compounds in SOM is negatively related to the relative abundance of ligninolytic Mycena and Kuehneromyces fungi, and positively related to Microbacteriaceae. Our findings suggest that by altering the composition of microbial communities on decaying fine roots such that their capacity for lignin degradation is reduced, experimental N deposition has slowed fine root litter decay, and increased the contribution of lignin‐derived compounds from fine roots to SOM. The microbial responses we observed may explain widespread findings that anthropogenic N deposition increases soil C storage in terrestrial ecosystems. More broadly, our findings directly link composition to function in soil microbial communities, and implicate compositional shifts in mediating biogeochemical processes of global significance.

Sponsoring Organization:
USDOE
OSTI ID:
1557335
Journal Information:
Global Change Biology, Journal Name: Global Change Biology Vol. 25 Journal Issue: 12; ISSN 1354-1013
Publisher:
Wiley-BlackwellCopyright Statement
Country of Publication:
United Kingdom
Language:
English
Citation Metrics:
Cited by: 27 works
Citation information provided by
Web of Science

References (95)

Anthropogenic N deposition, fungal gene expression, and an increasing soil carbon sink in the Northern Hemisphere journal July 2019
Ephemeral root modules in Fraxinus mandshurica journal September 2010
Total carbon and nitrogen in the soils of the world journal June 1996
Long-term nitrogen addition suppresses microbial degradation, enhances soil carbon storage, and alters the molecular composition of soil organic matter journal January 2019
Widespread Occurrence of Expressed Fungal Secretory Peroxidases in Forest Soils journal April 2014
Exploring the genomic diversity of black yeasts and relatives ( Chaetothyriales , Ascomycota ) journal March 2017
Contrasting soil fungal community responses to experimental nitrogen addition using the large subunit rRNA taxonomic marker and cellobiohydrolase I functional marker journal August 2014
Extracellular laccases in ascomycetesTrichoderma atroviride andTrichoderma harzianum journal August 2002
Redefining fine roots improves understanding of below-ground contributions to terrestrial biosphere processes journal March 2015
A new method for non-parametric multivariate analysis of variance: NON-PARAMETRIC MANOVA FOR ECOLOGY journal February 2001
Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible journal April 2014
Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy journal June 2007
Management intensity alters decomposition via biological pathways journal August 2010
A Large and Persistent Carbon Sink in the World's Forests journal July 2011
Anthropogenic N deposition increases soil organic matter accumulation without altering its biochemical composition journal October 2016
Clearcutting alters decomposition processes and initiates complex restructuring of fungal communities in soil and tree roots journal January 2018
Lignin-degrading ability of litter-decomposing basidiomycetes from Picea forests of Hokkaido journal January 2000
Ribosomal Database Project: data and tools for high throughput rRNA analysis journal November 2013
Nitrogen Cycles: Past, Present, and Future journal September 2004
The emerging role for bacteria in lignin degradation and bio-product formation journal June 2011
Simulated nitrogen deposition favors stress-tolerant fungi with low potential for decomposition journal October 2018
Chronic nitrogen deposition influences the chemical dynamics of leaf litter and fine roots during decomposition journal September 2017
Effects of long-term nitrogen deposition on fine root decomposition and its extracellular enzyme activities in temperate forests journal February 2016
Chronic nitrogen additions suppress decomposition and sequester soil carbon in temperate forests journal July 2014
Transformation of the Nitrogen Cycle: Recent Trends, Questions, and Potential Solutions journal May 2008
Fungal community on decomposing leaf litter undergoes rapid successional changes journal October 2012
Nitrogen Deposition Modifies soil Carbon Storage Through Changes in Microbial Enzymatic Activity journal August 2004
A trait-based approach for modelling microbial litter decomposition journal May 2012
Simulated Atmospheric Nitrogen Deposition Alters Actinobacterial Community Composition in Forest Soils journal January 2010
A flexible and efficient template format for circular consensus sequencing and SNP detection journal June 2010
Fine root decomposition, nutrient mobilization and fungal communities in a pine forest ecosystem journal April 2015
Long-Term Simulated Atmospheric Nitrogen Deposition Alters Leaf and Fine Root Decomposition journal April 2017
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities journal October 2009
Decomposition patterns for foliar litter – A theory for influencing factors journal November 2014
Contrasting Effects of Substrate and Fertilizer Nitrogen on the Early Stages of Litter Decomposition journal September 2005
Anthropogenic N deposition increases soil C storage by reducing the relative abundance of lignolytic fungi journal February 2018
Fine root Architecture of nine North American Trees journal May 2002
Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. journal August 1990
Chronic nitrogen additions fundamentally restructure the soil fungal community in a temperate forest journal October 2016
Manganese limitation as a mechanism for reduced decomposition in soils under atmospheric nitrogen deposition journal December 2018
The influence of microbial communities, management, and soil texture on soil organic matter chemistry journal May 2009
Lignin degradation: microorganisms, enzymes involved, genomes analysis and evolution journal October 2017
Enzyme production by Mycena galopus mycelium in artificial media and in Picea sitchensis F1 horizon needle litter journal August 2003
Anatomical traits associated with absorption and mycorrhizal colonization are linked to root branch order in twenty-three Chinese temperate tree species journal November 2008
Identification of a Novel Toluene-Degrading Bacterium from the Candidate Phylum TM7, as Determined by DNA Stable Isotope Probing journal May 2009
Review: lignin conversion by manganese peroxidase (MnP) journal April 2002
UCHIME improves sensitivity and speed of chimera detection journal June 2011
Anthropogenic N Deposition Alters the Composition of Expressed Class II Fungal Peroxidases journal February 2018
The Ecology of Soil Carbon: Pools, Vulnerabilities, and Biotic and Abiotic Controls journal November 2017
Nitrogen deposition increases root production and turnover but slows root decomposition in Pinus elliottii plantations journal March 2018
Chronic N deposition does not apparently alter the biochemical composition of forest floor and soil organic matter journal November 2012
Isolation, characterization and function of laccase from Trichoderma journal November 1992
Anthropogenic N Deposition Slows Decay by Favoring Bacterial Metabolism: Insights from Metagenomic Analyses journal March 2016
Limited Effects of Variable-Retention Harvesting on Fungal Communities Decomposing Fine Roots in Coastal Temperate Rainforests journal February 2018
Enzymatic "Combustion": The Microbial Degradation of Lignin journal October 1987
Use of multivariate methods in forest research site selection journal November 1991
Atmospheric Nitrate Deposition, Microbial Community Composition, and Enzyme Activity in Northern Hardwood Forests journal January 2004
Fine root decomposition rates do not mirror those of leaf litter among temperate tree species journal October 2009
Is soil carbon mostly root carbon? Mechanisms for a specific stabilisation journal February 2005
Factors That Affect Large Subunit Ribosomal DNA Amplicon Sequencing Studies of Fungal Communities: Classification Method, Primer Choice, and Error journal April 2012
Accurate, Rapid Taxonomic Classification of Fungal Large-Subunit rRNA Genes journal December 2011
Microbial phylogenetic profiling with the Pacific Biosciences sequencing platform journal March 2013
Atmospheric N Deposition Increases Bacterial Laccase-Like Multicopper Oxidases: Implications for Organic Matter Decay journal May 2014
Anthropogenic nitrogen deposition enhances carbon sequestration in boreal soils journal April 2015
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data journal April 2013
Linking litter decomposition of above- and below-ground organs to plant-soil feedbacks worldwide journal June 2013
Resilience vs. historical contingency in microbial responses to environmental change journal May 2015
Nitrogen deposition effects on soil organic matter chemistry are linked to variation in enzymes, ecosystems and size fractions journal October 2008
A keystone microbial enzyme for nitrogen control of soil carbon storage journal August 2018
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools journal November 2012
SIMULATED ATMOSPHERIC NO 3 DEPOSITION INCREASES SOIL ORGANIC MATTER BY SLOWING DECOMPOSITION journal December 2008
Microbial Mechanisms Mediating Increased Soil C Storage under Elevated Atmospheric N Deposition journal December 2012
Development of novel assays for lignin degradation: comparative analysis of bacterial and fungal lignin degraders journal January 2010
Isolation of bacterial strains able to metabolize lignin from screening of environmental samples journal June 2012
The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes journal June 2012
Simulated chronic nitrogen deposition increases carbon storage in Northern Temperate forests journal November 2007
Chronic nitrate additions dramatically increase the export of carbon and nitrogen from northern hardwood ecosystems journal April 2004
The contentious nature of soil organic matter journal November 2015
Formation of soil organic matter via biochemical and physical pathways of litter mass loss journal September 2015
Are Basidiomycete Laccase Gene Abundance and Composition Related to Reduced Lignolytic Activity Under Elevated Atmospheric NO3 − Deposition in a Northern Hardwood Forest? journal September 2008
Global patterns in root decomposition: comparisons of climate and litter quality effects journal November 2001
Nitrogen limitation of decomposition and decay: How can it occur? journal December 2017
Role of Productivity and Protozoan Abundance for the Occurrence of Predation-resistant Bacteria in Aquatic Systems journal September 2007
Microbial control over carbon cycling in soil journal January 2012
Contrasting dynamics and trait controls in first-order root compared with leaf litter decomposition journal September 2018
Reduction of forest soil respiration in response to nitrogen deposition journal April 2010
Carbon structure and enzyme activities in alpine and forest ecosystems journal November 2007
Changes in substrate availability drive carbon cycle response to chronic warming journal July 2017
Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina) journal May 2008
Bacterial contributions to delignification and lignocellulose degradation in forest soils with metagenomic and quantitative stable isotope probing journal September 2018
Simulated chronic NO 3 deposition reduces soil respiration in northern hardwood forests journal July 2004
Molecular-level changes in soil organic matter composition after 10 years of litter, root and nitrogen manipulation in a temperate forest journal October 2018
Fine roots are the dominant source of recalcitrant plant litter in sugar maple-dominated northern hardwood forests journal June 2015
Interactions among lignin, cellulose, and nitrogen drive litter chemistry–decay relationships journal February 2012
Integrating microbial ecology into ecosystem models: challenges and priorities journal September 2011

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