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Title: Understanding the origins of human cancer

Journal Article · · Science
 [1]
  1. Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

All cancers originate from a single cell that starts to behave abnormally, to divide uncontrollably, and, eventually, to invade adjacent tissues (1). The aberrant behavior of this single cell is due to somatic mutations—changes in the genomic DNA produced by the activity of different mutational processes (1). These various mutational processes include exposure to exogenous or endogenous mutagens, abnormal DNA editing, the incomplete fidelity of DNA polymerases, and failure of DNA repair mechanisms (2). Early studies that sequenced TP53, the most commonly mutated gene in human cancer, provided evidence that mutational processes leave distinct imprints of somatic mutations on the genome of a cancer cell (3). For example, C:G>A:T transversions predominate in smoking-associated lung cancer, whereas C:G>T:A transitions occurring mainly at dipyrimidines and CC:GG>TT:AA double-nucleotide substitutions are common in ultraviolet light–associated skin cancers. Moreover, these patterns of mutations matched the ones induced experimentally by tobacco mutagens and ultraviolet light, respectively, the major, known, exogenous carcinogenic influences in these cancer types, and demonstrated that examining patterns of mutations in cancer genomes can yield information about the mutational processes that cause human cancer (4).

Research Organization:
Los Alamos National Laboratory (LANL), Los Alamos, NM (United States)
Sponsoring Organization:
USDOE
Grant/Contract Number:
AC52-06NA25396
OSTI ID:
1240626
Report Number(s):
LA-UR-15-28485
Journal Information:
Science, Vol. 350, Issue 6265; ISSN 0036-8075
Publisher:
AAASCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 24 works
Citation information provided by
Web of Science

References (16)

Exploring the Genomes of Cancer Cells: Progress and Promise journal March 2011
Mutational signatures: the patterns of somatic mutations hidden in cancer genomes journal February 2014
New approaches to understanding p53 gene tumor mutation spectra journal December 1999
Carcinogens leave fingerprints journal January 1992
Deciphering Signatures of Mutational Processes Operative in Human Cancer journal January 2013
Learning the parts of objects by non-negative matrix factorization journal October 1999
Association of a germline copy number polymorphism of APOBEC3A and APOBEC3B with burden of putative APOBEC-dependent mutations in breast cancer journal April 2014
Subclonal diversification of primary breast cancer revealed by multiregion sequencing journal June 2015
Tracking the origins and drivers of subclonal metastatic expansion in prostate cancer journal April 2015
Exome sequencing of hepatocellular carcinomas identifies new mutational signatures and potential therapeutic targets journal March 2015
SETD2 loss-of-function promotes renal cancer branched evolution through replication stress and impaired DNA repair journal March 2015
Analysis of mutational signatures in exomes from B-cell lymphoma cell lines suggest APOBEC3 family members to be involved in the pathogenesis of primary effusion lymphoma journal February 2015
Heterogeneity of genomic evolution and mutational profiles in multiple myeloma journal January 2014
RAG-mediated recombination is the predominant driver of oncogenic rearrangement in ETV6-RUNX1 acute lymphoblastic leukemia journal January 2014
High burden and pervasive positive selection of somatic mutations in normal human skin journal May 2015
Genome sequencing of normal cells reveals developmental lineages and mutational processes journal June 2014

Cited By (11)

Mutational signature analysis identifies MUTYH deficiency in colorectal cancers and adrenocortical carcinomas: Mutational signature associated with MUTYH deficiency in cancers journal March 2017
Nonnegative tensor decomposition with custom clustering for microphase separation of block copolymers
  • Alexandrov, Boian S.; Stanev, Valentin G.; Vesselinov, Velimir V.
  • Statistical Analysis and Data Mining: The ASA Data Science Journal, Vol. 12, Issue 4 https://doi.org/10.1002/sam.11407
journal February 2019
Pan-cancer genome and transcriptome analyses of 1,699 paediatric leukaemias and solid tumours journal February 2018
Establishment and genomic characterization of gingivobuccal carcinoma cell lines with smokeless tobacco associated genetic alterations and oncogenic PIK3CA mutation journal June 2019
Understanding mutagenesis through delineation of mutational signatures in human cancer journal May 2016
Revertant mosaicism repairs skin lesions in a patient with keratitis-ichthyosis-deafness syndrome by second-site mutations in connexin 26 journal February 2017
Mutational signatures associated with tobacco smoking in human cancer journal November 2016
High Risk of Hepatocellular Carcinoma Development in Fibrotic Liver: Role of the Hippo-YAP/TAZ Signaling Pathway journal January 2019
Mutational signatures associated with tobacco smoking in human cancer posted_content May 2016
The repertoire of mutational signatures in human cancer text January 2020
The repertoire of mutational signatures in human cancer journal February 2020

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