skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Databases for rRNA gene profiling of microbial communities

Patent ·
OSTI ID:1086744

The present invention relates to methods for performing surveys of the genetic diversity of a population. The invention also relates to methods for performing genetic analyses of a population. The invention further relates to methods for the creation of databases comprising the survey information and the databases created by these methods. The invention also relates to methods for analyzing the information to correlate the presence of nucleic acid markers with desired parameters in a sample. These methods have application in the fields of geochemical exploration, agriculture, bioremediation, environmental analysis, clinical microbiology, forensic science and medicine.

Research Organization:
Taxon Biosciences, Inc. (Tiburon, CA)
Sponsoring Organization:
USDOE
DOE Contract Number:
FC36-01GO11016
Assignee:
Taxon Biosciences, Inc. (Tiburon, CA)
Patent Number(s):
8,476,016
Application Number:
13/019,045
OSTI ID:
1086744
Country of Publication:
United States
Language:
English

References (28)

Method for serial analysis of gene expression patent February 1999
Areal Contrasts in the Abundance of Hydrocarbon Oxidizing Microbes in Soils journal May 1959
eSAGE: managing and analysing data generated with Serial Analysis of Gene Expression (SAGE) journal July 2000
Natural Microbial Community Compositions Compared by a Back-Propagating Neural Network and Cluster Analysis of 5S rRNA journal May 1997
DNA recovery and PCR quantification of catechol 2,3-dioxygenase genes from different soil types journal December 1996
The ribosomal database project journal January 1993
A Molecular View of Microbial Diversity and the Biosphere journal May 1997
Non-cloning amplification of specific DNA fragments from whole genomic DNA digests using DNA ‘indexers’ journal August 1994
Method for serial analysis of gene expression patent December 1997
Methods for the survey and genetic analysis of populations patent September 2003
Detection and Identification of Previously Unrecognized Microbial Pathogens journal September 1998
Microbiological oil prospecting patent March 1992
Characterization of the diversity of sulfate-reducing bacteria in soil and mining waste water environments by nucleic acid hybridization techniques journal November 1994
High diversity in DNA of soil bacteria. journal January 1990
Microbial Indicators of Oil-Rich Salt Marsh Sediments journal December 1975
Geomicrobiological methods of ore and petroleum exploration patent October 1991
Identification and Phylogenetic Analysis of Thermophilic Sulfate-Reducing Bacteria in Oil Field Samples by 16S rDNA Gene Cloning and Sequencing journal June 1998
Distribution of Bifidobacterial Species in Human Intestinal Microflora Examined with 16S rRNA-Gene-Targeted Species-Specific Primers journal October 1999
Use of an Exotic Carbon Source To Selectively Increase Metabolic Activity and Growth of Pseudomonas putida in Soil journal July 1993
Nutritional Control of Rat Liver Fatty Acid Synthase and S14 mRNA Abundance journal February 1990
Phylogeny of the Main Bacterial 16S rRNA Sequences in Drentse A Grassland Soils (The Netherlands) journal March 1998
Serial Analysis of Gene Expression journal October 1995
Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis journal November 1997
Impact of Culture-Independent Studies on the Emerging Phylogenetic View of Bacterial Diversity journal September 1998
Gene Expression Profiles in Normal and Cancer Cells journal May 1997
Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. journal January 1993
Host-Bacterial Mutualism in the Human Intestine journal March 2005
Analysis of gene expression, methods and reagents therefor patent November 1999

Similar Records

Methods for the survey and genetic analysis of populations
Patent · Tue Sep 02 00:00:00 EDT 2003 · OSTI ID:1086744

DNA-based methods of geochemical prospecting
Patent · Tue Dec 06 00:00:00 EST 2011 · OSTI ID:1086744

Microbial Forensics: A Scientific Assessment
Conference · Mon Feb 17 00:00:00 EST 2003 · OSTI ID:1086744

Related Subjects